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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75795.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 416aa MW: 46373 Da PI: 7.9892 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.4 | 1.2e-35 | 43 | 185 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ MLOC_75795.6 43 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTMDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvhKG 135 799************.99******999667544333..3444433445**********.455567899******************75666664433 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MLOC_75795.6 136 ETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 185 778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-40 | 38 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.216 | 43 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-16 | 44 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MNRGHISSSE LIDAKLEEHR ISTARHCPNC RHKLDCKPDW LGLPAGVKFD PTDQELIEHL 60 EAKVREEGSR SHPLIDEFIP TIDGEDGICY THPEKLPGVT MDGLSKHFFH RPSKAYTTGT 120 RKRRKIQTEC DVHKGETRWH KTGKTRPVMA NGRQKGCKKI LVLYTNFGKH RKPEKTNWVM 180 HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSASSDRGG AGGAVAIAAA AAVTVQEQRR 240 RDSGSGSSSS RDHEALSATS YPAGYAMAAA VEMQHLKHSG DHFSFAPFRK SFEEVGIGGD 300 QVPSDHLGRS EHQQHAGQEQ QPHRPDLATT AVPATAFLVS RPTNPVSATV PPPLQHTSVV 360 LDHDQFHVPA IFLHHDKFQN MQQQQQQKVD RRSAGLEELV MGCTSTCTKG VSNFHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-13 | 41 | 185 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643861.1 | 0.0 | PREDICTED: protein ATAF2 isoform X2 | ||||
Refseq | XP_015688178.1 | 0.0 | PREDICTED: protein ATAF2 isoform X2 | ||||
Swissprot | O49459 | 1e-99 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | M0Z2C9 | 0.0 | M0Z2C9_HORVD; Uncharacterized protein | ||||
STRING | MLOC_75795.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-113 | NAC domain containing protein 75 |